PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G244500.1
Common NameB456_013G244500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 258aa    MW: 28644.1 Da    PI: 7.0317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G244500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.8e-181968255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +g+WvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Gorai.013G244500.1 19 KFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 68
                        799******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-191977IPR016177DNA-binding domain
CDDcd000188.68E-331978No hitNo description
PfamPF008478.8E-131968IPR001471AP2/ERF domain
SMARTSM003802.8E-371982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-281977IPR001471AP2/ERF domain
PROSITE profilePS5103219.8231976IPR001471AP2/ERF domain
PRINTSPR003674.2E-82031IPR001471AP2/ERF domain
PRINTSPR003674.2E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEHQVQTQQK GKFKERRNKF VGVRQRPSGK WVAEIKDTTQ KIRMWLGTFE TAEEAARAYD  60
EAACLLRGSN TRTNFATHVP TDSHLSLKIR NLLNHKKSLR QGKNNNSNST TNSNKITIKA  120
STIVGSNDSI NSSISNAGTD NFTCNSLVFD GAYRPELSGF VGELGLDPSQ LGQSWMIPTG  180
FDQIPLSQGL ELPQEVGVLP QGIDQELMEF ERLKVERQVS ATLYAMNGVN EYLQSAAFDP  240
NDAIWDLTTL CHLFCQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-152079363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4662839e-40AM466283.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X245563.19, clone ENTAV 115.
GenBankFQ3965869e-40FQ396586.1 Vitis vinifera clone SS0AEB9YH10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461789.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotQ6J9S14e-68RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLA0A0D2VJP10.0A0A0D2VJP1_G
STRINGPOPTR_0003s21090.11e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-55related to AP2 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]